Cadmium Carbonic Anhydrase (CdCA): Sustaining Life Using a Toxic Metal Ion

Submitted by Peter Craig / McDaniel College on Tue, 07/15/2014 - 01:18
Description

The Diatom Thalassiosira weissflogii is very resilient.  It thrives in poor quality water, where high CO2 levels, chlorine and cadmium ion concentrations, and pH are observed.  How is it possible for cadmium ions to be a nutrient for this diatom, when it is normally seen as a toxin in biological systems?

This LO introduces students to bioinorganic chemistry using the enzyme carbonic anhydrase to illustrate biodiversity, adaptation, HASB theory, metal ion ligand bonding as represented by the PDB using Ligand Explorer, and more.

The Aconitase Enzyme Mechanism

Submitted by Laurel Goj Habgood / Rollins College on Mon, 07/14/2014 - 16:51
Description

This learning objective focuses on the enzyme aconitase.  The iron-sulfur cluster is used to regulate iron in the cell and isomerize citrate for energy – two very different mechanisms.  The activity consists of an introduction to the enzyme and a student discussion on the mechanism of the isomerization of citrate to isocitrate; starting in a small group setting followed by a class debriefing.  

The Structure and Color of Alums

Submitted by EGunn / Simmons College on Mon, 07/14/2014 - 13:09
Description

This is an in-class assignment designed to help students integrate their understanding of periodic trends and materials properties. Using the color of alum crystals as an example of octahedral coordination chemistry, students use their knowledge of electronic structure and periodic trends to predict which of the isomorphous alum crystals will be colored, and to qualtitatively rank the degree of crystal field splitting in a family of alum crystals.

Inorganic Spectroscopy Introduced Using an Interactive PhET Simulation (Part 2)

Submitted by Alycia Palmer / The Ohio State University on Mon, 07/14/2014 - 09:06
Description

This is the second part of a two-day class discussion on molecular and inorganic spectroscopy. In this activity, upper level students learn about spectroscopic tecniques used in inorganic chemistry and then devise an experiment to follow the progress of a hypothetical reaction. The activity also prepares students for the inorganic laboratory "Linkage isomerism of nitrogen dioxide" in which infrared spectroscopy is used to monitor changes to the N-O vibrational stretch upon coordination to a metal.

Practical MCD Tutorial- How to collect MCD Data- Lehnert Lab

Submitted by Sheila Smith / University of Michigan- Dearborn on Thu, 07/10/2014 - 11:32
Description

Nicolai Lehnert's group recently shared this video they made for the Penn State Bioinorganic Workshops on Youtube.  This is a great practical demonstration of how MCD data is actually collected.

Hard Soft Acid Base Theory - Coordination Trends in Alkali Metal Crown Ether Uranyl Halide Complexes: The Series [A(Crown)]2[UO2X4] Where A = Li, Na, K, and X = Cl, Br

Submitted by Gerard Rowe / University of South Carolina Aiken on Tue, 07/01/2014 - 11:13
Description

In this literature discussion, students are asked to read an article describing a series of uranyl halide compounds that contain an alkali counterion that interacts with one or more of the uranium's ligand atoms.  This paper stands out as a great example of the binding preferences of acids and bases, and can be explained very well using simple HSAB concepts.

Learning Objects used at the 2014 VIPEr Workshop on Bioinorganic Chemistry

Submitted by Betsy Jamieson / Smith College on Wed, 06/25/2014 - 09:32

This collection highlights the learning objects used at the 2014 VIPEr workshop on the Bioinorganic Applications of Coordination Chemistry to introduce participants to the field of bioinorganic chemistry.   They provide essential background information on how metals bind to proteins as well as the techniques used in the research papers presented at the workshop.  A list of learning objects created at the workshop based on the current research of our expert speakers can be found at: 

Exploring Proteins as Ligands using the Protein Data Bank

Submitted by Betsy Jamieson / Smith College on Tue, 06/17/2014 - 15:23
Description

This in class activity is designed to introduce students to how amino acid side chains can coordinate metal ions in proteins.  It guides students through the exploration of several metal binding sites in proteins using the Ligand Explorer program on the Protein Data Bank (PDB) website.  Essentially, it is a way for them to use the PDB to “discover” the information generally presented on this topic in the introductory chapters of bioinorganic textbooks.  At the end it asks students to think about Hard Soft Acid Base theory and to see how that can be applied to the binding of metals in protei

Inorganic Spectroscopy Introduced Using an Interactive PhET Simulation (Part 1)

Submitted by Alycia Palmer / The Ohio State University on Wed, 04/30/2014 - 20:49
Description

A guided-inquiry activity for the interactive PhET simuation "Molecules and Light" was created to introduce upper-level inorganic laboratory students to inorganic spectroscopy. The activity included here is the first part of a two-day discussion. This activity instructs students to use the PhET simulation "Molecules and Light" to explore how various molecules interact with different energies of electromagnetic radiation (microwave, infrared, visible, ultraviolet). This activity can also be used in a general chemistry setting as the topics discussed are very basic.

Sheffield ChemPuter

Submitted by Chip Nataro / Lafayette College on Tue, 04/29/2014 - 16:42
Description

The Sheffield Chemputer is a site that does a variety of calculations including: isotope patterns, element percentages, reaction yields, oxidation states (for transition metal complexes), electron accounting (for metal complexes), VSEPR shape and classification using the CBC method. At the initial point of this post (April 29, 2014) parts of the site are still under development, but it seems to be off to a good start.