Exploring Proteins as Ligands using the Protein Data Bank

Submitted by Betsy Jamieson / Smith College on Tue, 06/17/2014 - 15:23
Description

This in class activity is designed to introduce students to how amino acid side chains can coordinate metal ions in proteins.  It guides students through the exploration of several metal binding sites in proteins using the Ligand Explorer program on the Protein Data Bank (PDB) website.  Essentially, it is a way for them to use the PDB to “discover” the information generally presented on this topic in the introductory chapters of bioinorganic textbooks.  At the end it asks students to think about Hard Soft Acid Base theory and to see how that can be applied to the binding of metals in protei

Protein Electrochemistry 3rd Bioinorganic Workshop

Submitted by Sheila Smith / University of Michigan- Dearborn on Tue, 06/10/2014 - 15:17
Description

This is a 90 minute talk by Fraser Armstrong of Oxford University (http://armstrong.chem.ox.ac.uk) explaining the electrochemistry of proteins immobilized on surfaces.  The talk was presented at the 3rd Bioinorganic Workshop in 2014 at Pennsylvania State University.  The talk contains an excellent basic tutorial on simple electron transfer on immobilized substrates using simple iron sulfur proteins as the primary example.

A Review of 3DMolSym: A Web Resource for Teaching Molecular Symmetry

Submitted by Marion Cass / Carleton College on Fri, 05/23/2014 - 19:22
Description

Introducing you to 3DMolSym:  A Web Resource for Teaching Molecular Symmetry that uses Adobe Shockwave for Visualizations and Animations.

Note there is a slight difference when operating this resource on a Mac or in a Windows Operating Systerm.  On a Mac if you don't change an item (any item) in the pull down menu on the right when the resouce opens, the selection of molecules will be frame shifted by one molecule.  An easy fix is described in the Description below.

The Structure and Symmetry of Metal Tris Chelates

Submitted by Marion Cass / Carleton College on Fri, 05/23/2014 - 15:59
Description

I have provided a link to a Web Resource:  The Strucutre and Symmetry of Metal Tris Chelates which I developed several years ago with my collegue Henry Rzepa from Imperial College London (and which was posted as Web Ware on the Jourmal of Chemical Education Website and is not longer available to view there).  The Web site uses 3D images of known molecules and scripted commands to teach about the symmetry elements and operations in these molecules.  Instruction is also given on assigning absolute configurations and ligand twist conformations.  Animations of the Bailar Twist and Ray Dutt Mech

Coordination complexes and crystal field theory in-class worksheet

Submitted by Sarah K. St. Angelo / Dickinson College on Mon, 04/28/2014 - 18:39
Description

This is an in-class activity that I made to help students in my second semester general chemistry course work through some aspects of color and coordination chemistry.  The activity was performed with a demonstration of color for nickel coordination complexes (ligands: water, ethylenediamine, and ammonia). I also included equilibria and thermodynamics as those concepts apply to coordination compounds at the introductory level.  This served as a review of the concepts as well.

Viewing Jmol Images and Animations (currently blocked) that call a Jmol Applet

Submitted by Marion Cass / Carleton College on Thu, 03/13/2014 - 22:31
Description

 

    Every day when I teach Inorganic Chemistry (and in most of my problem sets and take home exams) I create Web pages to show 3D images of selected molecules to my students.  I am a visual learner and I find the structures beautiful and informative.

    In the past few months, you likely have found that web sites scripted with Jmol scripts calling a Jmol applet (which is a Java applet) are blocked. 

Five Slides about Tanabe-Sugano Diagrams

Submitted by Sabrina Sobel / Hofstra University on Sat, 03/08/2014 - 15:32
Description

Brief introduction to d-orbital splitting, Russell-Saunders coupling, and application to UV-Vis spectroscopy using Tanabe-Sugano diagrams

Molecular Orbital of Transition Metal Complexes

Submitted by Steven Neshyba / University of Puget Sound on Wed, 02/05/2014 - 21:39
Description

Students construct computer models of two transition metal complexes, solve their electronic structures, and inspect the resulting d-type molecular orbitals to identify which are non-bonding, sigma* antibonding, or pi* antibonding. After constructing a molecular orbital diagram, they determine which of the two complexes is likely to absorb light at a longer wavelength.

Student choice literature-based take home exam question

Submitted by Hilary Eppley / DePauw University on Fri, 01/24/2014 - 15:27
Description

During my junior/senior level inorganic course, we did several guided literature discussions over the course of the semester where the students read papers and answered a series of questions based on them (some from this site!).  As part of my take home final exam, I gave the students an open choice literature analysis question where they had the chance to integrate topics from the semester into their interpretation of a recent paper of their own choice from Inorganic Chemistry, this time with limited guidance.

Electronic Absorption Spectroscopy of Aquated Transition Metal Ions

Submitted by Zachary Tonzetich / University of Texas at San Antonio on Thu, 01/23/2014 - 12:07
Description

I developed this laboratory experiment for our instrumental analysis class. The course is taken by junior and senior chemistry majors, who for the most part have had one inorganic chemistry course and some physical chemistry. The laboratory is operationally very simple and has students record the UV-vis spectra of transition metal sulfate salts in water using volumetric technique. They record the molar absorptivities for each peak and use this data to determine the number of waters of hydration for each salt by comparing with literature absorptivity values.